Pinned Repositories
IPEV
Software tool to identify prokaryotic and eukaryotic virus-derived sequences in virome using deep learning. Used to calculate a set of scores that reflect the probability that input sequence fragments are prokaryotic and eukaryotic viral sequences.
DETIRE
a hybrid Deep lEarning model for idenTifying vIral sequences fRom mEtagenomes
CrisprOpenDB
Demovir
Taxonomic classification of viruses at Order and Family level
rodentsvirome_filter1
python code used to filter BLASTn and BLASTx outputs used for rodents virome processing as "filter 1"
Scripts
Collection of various scripts
sequencetools
Set of scripts etc. to work with DNA sequence and related files
simple-consensus-per-read-group
Generate a simple consensus using % identity thresholds and minimum coverage from a SAM/BAM file, treating each read group (RG) separately.
tools-artbio
Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
ViCTree
An automated framework to aid taxonomic classification of viruses
shengxingou's Repositories
shengxingou/ViCTree
An automated framework to aid taxonomic classification of viruses
shengxingou/CrisprOpenDB
shengxingou/Demovir
Taxonomic classification of viruses at Order and Family level
shengxingou/rodentsvirome_filter1
python code used to filter BLASTn and BLASTx outputs used for rodents virome processing as "filter 1"
shengxingou/Scripts
Collection of various scripts
shengxingou/sequencetools
Set of scripts etc. to work with DNA sequence and related files
shengxingou/simple-consensus-per-read-group
Generate a simple consensus using % identity thresholds and minimum coverage from a SAM/BAM file, treating each read group (RG) separately.
shengxingou/tools-artbio
Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)