Pinned Repositories
bioinformatics_scripts
Some scripts to perform general bioinformatics functions
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
DESCHRAMBLER
easy_psmc_plot
this script is aim to plot the PSMC result by an easy way
Extract_Consensus_Sequences_of_Genes_from_BAM_parallel
This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of phylogenetic trees as well as visualisations
HPA
Haplotype-based Phylogenetic Analysis for Polyploid
IntroBlocker
The IntroBlocker ancestry inference algorithm
nPhase
Ploidy agnostic phasing pipeline and algorithm
snp-sites
Finds SNP sites from a multi-FASTA alignment file
shengxinzhuan's Repositories
shengxinzhuan/Extract_Consensus_Sequences_of_Genes_from_BAM_parallel
This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of phylogenetic trees as well as visualisations
shengxinzhuan/easy_psmc_plot
this script is aim to plot the PSMC result by an easy way
shengxinzhuan/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
shengxinzhuan/snp-sites
Finds SNP sites from a multi-FASTA alignment file
shengxinzhuan/bioinformatics_scripts
Some scripts to perform general bioinformatics functions
shengxinzhuan/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
shengxinzhuan/DESCHRAMBLER
shengxinzhuan/HPA
Haplotype-based Phylogenetic Analysis for Polyploid
shengxinzhuan/IntroBlocker
The IntroBlocker ancestry inference algorithm
shengxinzhuan/nPhase
Ploidy agnostic phasing pipeline and algorithm
shengxinzhuan/octopus
Bayesian haplotype-based mutation calling
shengxinzhuan/Populus_genomic_prediction_climate_vulnerability
shengxinzhuan/shengxinzhuan.github.io
bioinfo
shengxinzhuan/TGG
tomato graph pangenome
shengxinzhuan/THEx
Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
shengxinzhuan/transanno
accurate LiftOver tool for new genome assemblies
shengxinzhuan/tree_utilities
Simulate gene trees given a newick species tree with branch lengths in coalescent units.
shengxinzhuan/updog
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
shengxinzhuan/vcfpop
shengxinzhuan/Work_flow_of_population_genetics
整理常用的群体遗传学分析流程和脚本