Using python to batch query literatures from pubmed automatically, red rows in xlsx file are keywords that mis-matched

1) install

  • downnload the zip file, then unzip;
  • $ cd ./AutoQueryPubMed-master
  • $ pip install -r requirements.txt

2) usage:

  • $ python QueryPubmedTool.py input.txt output.xlsx pharmacokinetics
or open verbose to print log info by:
  • $ python QueryPubmedTool.py input.txt output.xlsx pharmacokinetics --verbose