/ohbm-handson-test

earlier data/code upload

Primary LanguagePythonMIT LicenseMIT

ohbm-handson-test

reproducing the awesome publication.

  1. "code" includes python scripts
  2. "data" includes thickness data from 259 subjects

install the required python packages with pip:

pip install -r requirements.txt

clone and install the brainstat:

git clone https://github.com/MICA-MNI/BrainStat.git
cd BrainStat
python3 setup.py build
python3 setup.py install --user

creating a virtual environment with pip:

pip install virtualenv #install the package
virtualenv --python=python3 mypythonenv #create a new virtual environment
source mypythonenv/bin/activate #activate the virtual environment

now install your packages with pip and do the analysis

deactivate #deactivate the virtual environment

running the code

navigate to the "code" directory firstly and run the "analysis_01.py" script.

$ cd code
$ python3 analysis_01.py

running on cloud:

Binder