shhong
Computational neuroscientist at the Center for Cognition and Sociality at IBS
Center for Cognition and Sociality, IBSDaejeon, South Korea
Pinned Repositories
a310_cns_2017
Materials for Computational Neuroscience course (A310) at Okinawa Institute of Science and Technology, 2017
csprc
CSPRC: Efficient Estimator of Phase Response Curve via Compressive Sensing
ocnc2023
simple_two_layer_network
Scripts for simulating simple two-layered neural network to probe the correlation structure.
spikecount
shhong's Repositories
shhong/ocnc2023
shhong/a310_cns_2023
A310 Computational Neuroscience at OIST - Exercise lessons and homework
shhong/affinewarp
An implementation of piecewise linear time warping for multi-dimensional time series alignment
shhong/arbor
The Arbor multi-compartment neural network simulation library.
shhong/avatarpy
avatar
shhong/BlenderSpike
A Blender add-on to bring animations from NEURON
shhong/cb2_project_analysis
Analysis source code for CB2 project
shhong/course-content-dl
shhong/DeepDendrite
shhong/DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
shhong/detect_CS
Deep learning based detection of complex spikes
shhong/HetFFN-
Codes for paper "Lamina-specific neuronal properties promote robust, stable signal propagation in feedforward networks", NeurIPS 2020
shhong/hierarchical_lfads
Pytorch implementation of lfads, and hierarchical extension
shhong/jupytext
Jupyter notebooks as Markdown documents, Julia, Python or R scripts
shhong/napari-sam
shhong/napari-segment-anything-2
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
shhong/neuromatch_ssl_tutorial
Neuromatch 2021 SSL tutorial
shhong/neuron_as_deep_net
Code behind the work "Single Cortical Neurons as Deep Artificial Neural Networks", published in Neuron 2021
shhong/neuron_reduce
shhong/NeuroPyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
shhong/nrn
NEURON Simulator
shhong/pycabnn
Python tool for constructing an anatomical basis of a neural network
shhong/pynapple
PYthon Neural Analysis Package :pineapple:
shhong/PyNN
A Python package for simulator-independent specification of neuronal network models.
shhong/rnaSeqMiniCourse
shhong/shhong.github.io
shhong/subtle
Spectrogram-UMAP-based Temporal Link Embedding
shhong/taichi
Productive & portable programming language for high-performance, sparse & differentiable computing on CPUs & GPUs
shhong/tslearn
A machine learning toolkit dedicated to time-series data
shhong/vispy
Main repository for Vispy