-i option listed in wiki for both INPUT_FOLDER and --percent_identity
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BiologicalScientist commented
Hi,
If using the -i flag for the --percent identity as listed in the wiki it will automatically default to 80 as that flag is already in use for the input folder. Not sure if its an issue in the actual code or not but using --percent_identity instead works.
shimbalama commented
Sorry. Typo. -i is input. -pl is percent length and -pi is percent identity (or --percent_identity).
Thanks for spotting this!
Liam