shiquan/bamdst

Issues

• Error ocurrus when use bamdst to stat WGS bam file

  #38 opened 4 months ago by yuanpingdu
  7

• I'd like to know bamdst how to handle overlapping pair-end reads

  #41 opened 6 months ago by 13thirteen-w
  0

• specifying more than one --cutoffdepth value

  #3 opened 6 months ago by Anupriya014
  4

• How to use multiple args in '--cutoffdepth'

  #9 opened 6 months ago by HEKntg
  4

• How to change the name of output file

  #32 opened 2 years ago by WangJH95
  1

• about the depth.tsv.gz

  #37 opened 8 months ago by work-liuyang
  4

• AMP data whitout rmdup but different

  #35 opened a year ago by user-tq
  2

• question about long reads

  #36 opened a year ago by crazysummerW
  3

• Raw Reads (All reads) are a bit off

  #18 opened 5 years ago by cangfengzhe
  4

• Coverage difference between bamdst and gatk DepthOfCoverage

  #34 opened a year ago by jhylwq123
  1

• [Target] Coverage (>0x) 100.00% but uncover.bed is not umpty

  #33 opened 2 years ago by step1xiao
  1

• Multi-genomes

  #31 opened 2 years ago by TKsh6
  5

• Segmentation fault (core dumped)

  #30 opened 2 years ago by Alipe2021
  3

• how to accelerate the software bamdst

  #29 opened 2 years ago by huangl07
  0

• error 404 Issue installing private repos with devtools

  #28 opened 2 years ago by elviszhwx
  1

• make warning

  #27 opened 2 years ago by xieduo7
  0

• Segmentation fault (core dumped)

  #22 opened 2 years ago by stroke1989
  9

• Suggestion - making a bioconda recipe

  #26 opened 2 years ago by tamuanand
  0

• @@ ERROR ABORT @@ bam files are not properly sorted

  #25 opened 2 years ago by evenif2000
  2

• make error

  #24 opened 2 years ago by evenif2000
  1

• multithreading support

  #23 opened 2 years ago by linlin-coder
  1

• what should i do?

  #20 opened 3 years ago by ZhouTaoWang
  1

• bigger flank reads than expected

  #17 opened 5 years ago by N-damo
  1

• 请问使用您的软件，如何引用？

  #19 opened 3 years ago by zxy1555847
  1

• Memory Bugs

  #8 opened 6 years ago by yzhang88
  4

• Installation Error

  #16 opened 5 years ago by Garvin-Hu
  5

• mapped reads

  #15 opened 5 years ago by N-damo
  2

• make error

  #14 opened 6 years ago by yanglq-bio
  3

• rmdupdep includes low quality reads below the threshold

  #12 opened 6 years ago by tfmorris
  0

• how to use MapQ to filter read at target average depth counts (rmdup) ?

  #4 opened 7 years ago by zeronot
  3

• Is the Merging of bed files with respect to strand?

  #10 opened 6 years ago by songtaogui
  1

• what each column of *.plot means

  #11 opened 6 years ago by taccycle
  1

• invalid BAM binary header (this is not a BAM file) using bamdst.

  #7 opened 6 years ago by U201412486
  1

• BUG: supplementary mapping is used for reads counting

  #6 opened 6 years ago by lozybean
  1

• License?

  #5 opened 7 years ago by tfmorris
  3

• exit issue

  #2 opened 8 years ago by lozybean
  2

• What is the meaning of each row.

  #1 opened 9 years ago by lozybean
  1