Pinned Repositories
18S191
Course 18.S191 at MIT, fall 2020 - Introduction to computational thinking with Julia:
corr-spec
simulation of 2D diffusion on a grid to understand fluorescence correlation spectroscopy (FCS)
hmms
decoding, evaluating and learning HMMs from a bioinformatics perspective
optimal-forager
numerical description of optimal foraging
prinia-project
methods to analyse multi-species bioacoustic datasets
rad-gyres
calculating radii of gyration of proteins from .pdb files
seq-al
aligning DNA and protein sequences using dynamic programming
stokes-flow
Fluid Dynamics Simulations in the Low Reynolds Number Regime
tureactor
models of 2D reaction-diffusion systems
unityvr
Tools for analyzing data collected with a custom unity-based VR for insects.
shivChitinous's Repositories
shivChitinous/tureactor
models of 2D reaction-diffusion systems
shivChitinous/seq-al
aligning DNA and protein sequences using dynamic programming
shivChitinous/optimal-forager
numerical description of optimal foraging
shivChitinous/corr-spec
simulation of 2D diffusion on a grid to understand fluorescence correlation spectroscopy (FCS)
shivChitinous/rad-gyres
calculating radii of gyration of proteins from .pdb files
shivChitinous/18S191
Course 18.S191 at MIT, fall 2020 - Introduction to computational thinking with Julia:
shivChitinous/hmms
decoding, evaluating and learning HMMs from a bioinformatics perspective
shivChitinous/impact-fac
estimating the "impact" of JEB for 2018
shivChitinous/prinia-project
methods to analyse multi-species bioacoustic datasets
shivChitinous/stokes-flow
Fluid Dynamics Simulations in the Low Reynolds Number Regime
shivChitinous/unityvr
Tools for analyzing data collected with a custom unity-based VR for insects.
shivChitinous/finch-pack
PCB to record and amplify respiratory pressure in adult zebra finches
shivChitinous/fly2p
small package with utility functions for analyzing (fly) calcium imaging data
shivChitinous/future-of-foraging-seminars.github.io
shivChitinous/GarnerKindLai_MeTu
GarnerKindLai_MeTu paper
shivChitinous/image-annals
scripts written for an image-analysis course
shivChitinous/jam-avoid
visualisation of the jamming avoidance response in weakly electric fish
shivChitinous/janelia-unity-toolkit
Packages for the Unity game engine, emphasizing animal studies in VR.
shivChitinous/mass-spec
Modelling Ion Traps and Mass Analyzers
shivChitinous/mathbio_models
Repository of numerical implementations of mathematical models that I found and thought were pretty cool.
shivChitinous/Modeller
Comparative homology modelling of SARSCov2 NSP4 subregion using Modeller
shivChitinous/neuprint-python
Python client utilties for interacting with the neuPrint connectome analysis service
shivChitinous/NMA-course-content
Summer course content for Neuromatch Academy
shivChitinous/pandem-onion
visualising SIRS model of epidemic spread
shivChitinous/recombinator
model of meiotic recombination
shivChitinous/route-nav
Network Model of Route Navigation in Cataglyphis
shivChitinous/songburst
Package to construct network models of songbird nucleus HVC
shivChitinous/traja
Python tools for 2D spatial trajectory data
shivChitinous/unityScripts
collection of c# scripts for unity-based virtual reality
shivChitinous/vrStim
Generation and analysis of visual stimuli used in fly virtual reality