Pinned Repositories
20210126
20210126
210623_RC_chapt6
for reading club
210715
240420
Arenaviridae_overhang_analysis_2022
collapse_RepeatMasker_annotation
integrated_HHV6_recon
iciHHV6_reconstruction_pipeline
MEGAnE
MEGAnE
quick_variant_calling
Cheap but quick variant calling from WGS and RNA-seq
virus_nucleotide_detection
Virus nucleotide detection from NGS
shohei-kojima's Repositories
shohei-kojima/MEGAnE
MEGAnE
shohei-kojima/collapse_RepeatMasker_annotation
shohei-kojima/virus_nucleotide_detection
Virus nucleotide detection from NGS
shohei-kojima/integrated_HHV6_recon
iciHHV6_reconstruction_pipeline
shohei-kojima/quick_variant_calling
Cheap but quick variant calling from WGS and RNA-seq
shohei-kojima/20210126
20210126
shohei-kojima/210623_RC_chapt6
for reading club
shohei-kojima/210715
shohei-kojima/240420
shohei-kojima/Arenaviridae_overhang_analysis_2022
shohei-kojima/Filo_Paramyxo_2023
shohei-kojima/hervk_kmers
Extract k-mer freq from WGS reads mapped to HERV-K
shohei-kojima/decomposition
shohei-kojima/human_anellovirus_detection
shohei-kojima/iwamoto_et_al_2020
shohei-kojima/Kojima_et_al_2021_PNAS
shohei-kojima/misc_cpp_progs
misc_cpp_progs
shohei-kojima/my_rust
Just some misc Rust codes for bioinformatics.
shohei-kojima/phylo-dbscan
Clustering by DBSCAN for phylogenetic tree (.nwk)
shohei-kojima/qual_binning
Converts BAM/CRAM to a CRAM with quality scoring by 8- or 4-binning.
shohei-kojima/regressions
Just a repo for myself
shohei-kojima/rust-htslib-081922
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
shohei-kojima/shohei-kojima.github.io
Shohei's home page