Pinned Repositories
Database-Darkly
microbes-need-frenemies-euk-metaT
Descriptions and code for metatranscriptome analysis related to project "Microbes need frenemies"
microeuk-amplicon-survey
Globally-distributed microbial eukaryotes exhibit endemism at deep-sea hydrothermal vents
midcayman-rise-microeuk
Data analysis for Microbial eukaryotic predation pressure and biomass at Mid-Cayman Rise: Implications for deep-sea carbon cycling
pacificocean-metaT
PaletteWoodsHole
R color palettes inspired by Woods Hole and Falmouth.
protist-gordaridge-2021
Data analysis, raw data, and Rmarkdown files for protist grazing paper.
qiime2_ASVworkflow_v8
tagseq-qiime2-snakemake
Pipeline to run qiime2 with snakemake
V4_tagsequencing_18Sdiversity_qiime2
Pipeline for sequence QC and analysis in qiime2 - specific for 18S diversity
shu251's Repositories
shu251/microbes-need-frenemies-euk-metaT
Descriptions and code for metatranscriptome analysis related to project "Microbes need frenemies"
shu251/Database-Darkly
shu251/microeuk-amplicon-survey
Globally-distributed microbial eukaryotes exhibit endemism at deep-sea hydrothermal vents
shu251/midcayman-rise-microeuk
Data analysis for Microbial eukaryotic predation pressure and biomass at Mid-Cayman Rise: Implications for deep-sea carbon cycling
shu251/pacificocean-metaT
shu251/2021-12-01-WHOI-plotting
Plotting workshop in R
shu251/Axial-2023-cell-counts
Prokaryotic and eukaryotic cell counts from cruise to Axial Seamount 2023, PROTATAX23
shu251/axial-amplicons-2023
shu251/axial-grazing-experiments
shu251/CA-ALOHA-metatranscriptome-analysis
Data analysis for metatranscriptome survey from station ALOHA and coastal California
shu251/deep-sea-microeuk-DB
shu251/GoM-IFCB-PortAransas
shu251/GoM-oceanography
shu251/GoM-preliminary-amplicon
shu251/hydrothermal-vent-metazoa
shu251/introduction-to-R
shu251/lab
Personal documentation for lab protocols
shu251/mcr-metag-frenemies
shu251/meta-eukomic
shu251/microcolonizers-GordaRidge
shu251/phylogeny-r-amplicon
shu251/qiime2-2024
shu251/r-microbio-ocean
shu251/r-ventures
shu251/sarah-hu
shu251/shiny-wordle
Wordle in Shiny
shu251/slo-pier-comparison-2023
shu251/tamu-gardens-timeseries
shu251/trac-testing
shu251/tuneR