Pinned Repositories
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
AlignmentC
Alignment code in C++
batch_effects_workflow_code
Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics
CodeShare
This repository contains code files I have been generating to learn BioInformatics
datasciencecoursera
Repository for data science course
datasharing
The Leek group guide to data sharing
DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
DIAlignR
This is a R package for alignment of DIA mass-spec data
msproteomicstools
Some hopefully useful tools for mass spectrometry applied to proteomics
shubham1637's Repositories
shubham1637/DIAlignR
This is a R package for alignment of DIA mass-spec data
shubham1637/CodeShare
This repository contains code files I have been generating to learn BioInformatics
shubham1637/datasharing
The Leek group guide to data sharing
shubham1637/msproteomicstools
Some hopefully useful tools for mass spectrometry applied to proteomics
shubham1637/ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
shubham1637/ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
shubham1637/AlignmentC
Alignment code in C++
shubham1637/batch_effects_workflow_code
Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics
shubham1637/datasciencecoursera
Repository for data science course
shubham1637/DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
shubham1637/DIAlignment
Extension of the DIAlign R package (alignment algorithm) for multi-alignment via hierarchical clustering
shubham1637/easypqp
EasyPQP: Simple library generation for OpenSWATH
shubham1637/fit-rec
Code for WWW 19' paper
shubham1637/genstats
Statistics course for JHU Genomic Data Science Sequence
shubham1637/ipop_aging
Code for aging project
shubham1637/massformer
Tandem Mass Spectrum Prediction with Graph Transformers
shubham1637/MayInstitute2020-IntermediateR
May Institute 2020 Online - Intermediate R Crash Course
shubham1637/NN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
shubham1637/OnlineCourses
This repo contains few courses I did to learn Bioinformatics and Machine learning
shubham1637/OpenMS
The codebase of the OpenMS project
shubham1637/Orphan-CRISPR-project
Python Scripts
shubham1637/pyprophet
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
shubham1637/python-cpp-challenge
A public challenge (examples and tests) for tools that provide Python interfaces to C++ libraries.
shubham1637/pytorch_tutorial
PyTorch Tutorial (1.3)
shubham1637/rptPlus
...
shubham1637/studyGroup
Welcome to the University of Toronto Scientific Coders!
shubham1637/Task208_Jon
Some data from Jonathan Roth for alignment
shubham1637/Test-repo
shubham1637/tfold-release
TFold v1.0