R script to analyze DNA barcodes and create graphs for analysis. It reads DNA sequence from head_RAD_seq.fq and extract all of the barcodes in the sequence and provides an analysis.
You can download source code from GitLab and put into a folder.
You could use RStudio to execute lines of code in demultiplex.R
barcodes.csvThis is the data set of DNA barcodes separated by gender.
head_RAD_seq.fq This is the DNA sequence file to be processed. The one in this repository could be used as an example of the format of sequence.
You may email me at shukaiz2@illinois.edu.