shumailasy

shumailasy's Stars

• rstudio/cheatsheets

  Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

  Language:TeX5.8k23201.8k

• workflowr/workflowr

  Organize your project into a research website

  Language:R82430252106

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R4091212581

• talgalili/heatmaply

  Interactive Heat Maps for R Using plotly

  Language:R3782525473

• nf-core/methylseq

  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

  Language:Nextflow140144134144

• gavinha/TitanCNA

  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

  Language:R9338236

• zwdzwd/sesame

  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

  Language:R60714531

• Christensen-Lab-Dartmouth/MethylNet

  Modular framework for deep learning predictions on methylation data.

  Language:HTML5171511

• cxzhu/Paired-Tag

  Analysis of Paired-Tag datasets

  Language:C++3951914

• ewels/nf-core-rnaseq

  See the main fork of this repository here >>>

  Language:Nextflow38804

• erdogant/kaplanmeier

  kaplanmeier is an python library to create survival curves using kaplan-meier, and compute the log-rank test.

  Language:Python323710

• NBISweden/workshop-neural-nets-and-deep-learning

  NBIS workshop in Neural Nets and Deep Learning

  Language:HTML184609

• TranslationalBioinformaticsUnit/GeneSetCluster

  a tool for summarizing and integrating gene-set analysis results

  Language:HTML16534

• Oshlack/MethylationAnalysisWorkflow

  A cross-package Bioconductor workflow for analysing methylation array data

  Language:TeX112014

• sailalithabollepalli/EpiSmokEr

  Epigenetic Smoking status Estimator

  Language:HTML11013

• genomic-medicine-sweden/gms-artic

  A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).

  Language:Nextflow93296

• Systems-Immunology-IKMB/COVIDOMICs

  Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-19 trajectories

  Language:R9309

• MengweiLi-project/gmqn

  Gaussian Mixture Quantile Normalization (GMQN)

  Language:R6213

• anilpsori/DNAm_pipelines_and_biomarkers

  Language:R5104

• aet21/EpiMitClocks

  Epigenetic Mitotic Clocks

  Language:HTML4200

• cihangenome/multiomics-misc

  This repository contains the R scripts that were used in the immune repertoire, gene expression, and biomarker analyses presented in "Multiomics approach identifies novel age-, time- and treatment-related immunopathological signatures in MIS-C and pediatric COVID-19". The single cell expression and repertoire analysis scripts have been contributed by Can Liu.

  Language:R3201

• hydra-genetics/hydra-genetics

  Command line interface to create new modules/pipelines or adding a new rule to a existing project. Helper libraries for handling samples and units.

  Language:Python32161

• igemsoftware2020/ClusteRsy-Linkoping

  ClusteRsy is a user-friendly software for transcriptome analysis and is developed by the Linköping iGEM team 2020.

  Language:R37720

• Goldu/Balanced-Parentheses-in-an-Expression-in-C-

  Check for Balanced Parentheses in an Expression

  210

• ljwharbers/COVseq

  Code used for COVseq manuscript

  Language:R1100

• Molmed/Krali-Palle_2021

  Language:Jupyter Notebook1701

• UPPMAX/bio-data

  Scripts and routines for retrieval and maintenance of biologically-relevant data resources for UPPMAX

  Language:Perl1400