shunhuahan

mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

ngs_te_mapper2

Software for detecting transposable element insertions from next-generation sequencing data

TELR

TELR is a fast non-reference transposable element detector from long read sequencing data.

asm-to-reference-alignment

bioconda-recipes

Conda recipes for the bioconda channel.

Gauchian

A variant caller for the GBA gene using WGS data

GraphAlignmentViewer

grocsvs

Genome-wide reconstruction of complex structural variants

hugo

mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

shunhuahan/asm-to-reference-alignment

shunhuahan/bioconda-recipes

Conda recipes for the bioconda channel.

shunhuahan/Gauchian

A variant caller for the GBA gene using WGS data

shunhuahan/GraphAlignmentViewer

shunhuahan/grocsvs

Genome-wide reconstruction of complex structural variants

shunhuahan/hugo

shunhuahan/mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

shunhuahan/parascopy

Paralog-specific copy number estimation for duplicated genes using WGS.

shunhuahan/seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

shunhuahan/shunhuahan

Config files for my GitHub profile.

shunhuahan/shunhuahan.github.io

Shunhua's personal website

shunhuahan/SMNCopyNumberCaller

A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS

shunhuahan/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

shunhuahan/starter-hugo-academic

🎓 Hugo Academic Theme

shunhuahan/TEMP

TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data