shunsunsun
I am working in ML and DL, computational biology, QSAR, bioinformatics. a PhD student
yonsei university
Pinned Repositories
ColabFold
Making Protein folding accessible to all via Google Colab!
conformer-rl
A deep reinforcement learning library for conformer generation.
CVPR2021-Papers-with-Code-Demo
收集 CVPR 最新的成果，包括论文、代码和demo视频等，欢迎大家推荐！
DeepAAI
DeepAAI: A Novel Deep Learning Framework for Predicting Antigen-Antibody Interaction
mhn-react
Modern Hopfield Network (MHN) for template relevance prediction
MolReactGen
Auto-regressive causal language model for molecule (SMILES) and reaction template (SMARTS) generation based on the Hugging Face implementation of OpenAI's GPT-2 transformer decoder model
openai-cookbook
Examples and guides for using the OpenAI API
rl
A modular, primitive-first, python-first PyTorch library for Reinforcement Learning.
SMILES-MaskGAN
SWIT
shunsunsun's Repositories
shunsunsun/2023_RL_capsid_design
shunsunsun/AQDnet
shunsunsun/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
shunsunsun/automated-interpretability
shunsunsun/awesome-pretrain-on-molecules
[IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models
shunsunsun/CGIB
The official source code for "Conditional Graph Information Bottleneck for Molecular Relational Learning".
shunsunsun/clusterCAD
A computational platform for type I modular PKS and NRPS design
shunsunsun/Deep-Whole-Body-Control
[CoRL 2022] Deep Whole-Body Control: Learning a Unified Policy for Manipulation and Locomotion
shunsunsun/dnada
shunsunsun/foldy
Foldy: a web-based platform for interactive protein structure analysis
shunsunsun/ice
Web based Registry platform for managing synthetic biological parts
shunsunsun/KANO
Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
shunsunsun/MADDi
This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).
shunsunsun/molecule-generation
Implementation of MoLeR: a generative model of molecular graphs which supports scaffold-constrained generation
shunsunsun/OpenBioMed
shunsunsun/opsin-ws
An OPSIN web service using an AJAX enabled HTML page backed by Restlet
shunsunsun/Papyrus-scripts
shunsunsun/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
shunsunsun/PLIP-PyRosetta-hotspots-test
A proof-of-principle of using PLIP and PyRosetta as a substitute to Hotspot API and CCDC Gold
shunsunsun/PyHealth
A Python Library for Healthcare Predictive Tasks
shunsunsun/QEPPI
Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions
shunsunsun/RcppML
Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
shunsunsun/Robo-GPT
A simple and extensible program that helps you run GPT-4 model autonomously.
shunsunsun/scPoli_reproduce
Reproducibility notebooks for scPoli
shunsunsun/SELFormer
SELFormer: Molecular Representation Learning via SELFIES Language Models
shunsunsun/senolyticsai
Supporting code for the paper "Discovering senolytics with deep learning"
shunsunsun/SMART
Extract geometric traits from top-view images of plants.
shunsunsun/SmilesPE
SMILES Pair Encoding: A data-driven substructure representation of chemicals
shunsunsun/targetdiff
The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)
shunsunsun/toolformer-pytorch
Implementation of Toolformer, Language Models That Can Use Tools, by MetaAI