shunsunsun
I am working in ML and DL, computational biology, QSAR, bioinformatics. a PhD student
yonsei university
Pinned Repositories
ColabFold
Making Protein folding accessible to all via Google Colab!
conformer-rl
A deep reinforcement learning library for conformer generation.
CVPR2021-Papers-with-Code-Demo
收集 CVPR 最新的成果,包括论文、代码和demo视频等,欢迎大家推荐!
DeepAAI
DeepAAI: A Novel Deep Learning Framework for Predicting Antigen-Antibody Interaction
mhn-react
Modern Hopfield Network (MHN) for template relevance prediction
MolReactGen
Auto-regressive causal language model for molecule (SMILES) and reaction template (SMARTS) generation based on the Hugging Face implementation of OpenAI's GPT-2 transformer decoder model
openai-cookbook
Examples and guides for using the OpenAI API
rl
A modular, primitive-first, python-first PyTorch library for Reinforcement Learning.
SMILES-MaskGAN
SWIT
shunsunsun's Repositories
shunsunsun/2d-pharmacophore-search
simple rdkit script
shunsunsun/activepapers-python
Python edition of ActivePapers
shunsunsun/analyze_plate_reader_growth
Matlab script to analyze bacteria doubling time from plate reader data
shunsunsun/ChemLSTM
Using LSTM based language model with tokenized chemical name to predict the reaction of organic chemicals
shunsunsun/clrs-solutions
My solutions to "Introduction to Algorithms"
shunsunsun/customer-potential-value-prediction-
We use python to predict a customer's potential value based on his historical transaction behaviours without survey data
shunsunsun/decaf-release
Decaf is DEPRECATED! Please visit http://caffe.berkeleyvision.org/ for Caffe, the new framework that has all the good things: GPU computation, full train/test scripts, native C++, and an active community!
shunsunsun/difacto
Distributed Factorization Machines
shunsunsun/distribute_crawler
使用scrapy,redis, mongodb,graphite实现的一个分布式网络爬虫,底层存储mongodb集群,分布式使用redis实现,爬虫状态显示使用graphite实现
shunsunsun/ensemble_amazon
Code to share different ensemble techniques with focus on meta-stacking , using data from Amazon.com - Employee Access Challenge kaggle competition
shunsunsun/experimental-lda
shunsunsun/experimental-mf
cache-friendly multithread matrix factorization
shunsunsun/Helium
A lightweight generic cheminformatics toolkit
shunsunsun/HERG-QSAR
Using RDKIT and SciKit-Learn to analyse Herg data from Chembl
shunsunsun/hgnc-gene-family-mapper
Draws a map of a HGNC gene family hierarchy for a family
shunsunsun/libmf
shunsunsun/mAMBER
Paralle Acceleration for AMBER on Tianhe-2
shunsunsun/nodejs_tutorial
shunsunsun/Open-Source-Molecular-Modelling
shunsunsun/openscienceprize
Making reusability a first class citizen in the academic workflow.
shunsunsun/phd-thesis
Repository of my thesis "Understanding Random Forests"
shunsunsun/photo-labeling
shunsunsun/python-mle
A Python package for performing Maximum Likelihood Estimates
shunsunsun/reference_genome_maker
Python scripts to create reference genome files (e.g. Genbank) from various inputs (e.g. vcf)
shunsunsun/scLVM-correspondence
NBT correspondence on scLVM
shunsunsun/scLVM-tutorials
shunsunsun/semisup-learn
Semi-supervised learning frameworks for python, which allow fitting scikit-learn classifiers to partially labeled data
shunsunsun/tensorprob
A probabilistic graphical modeling framework based on TensorFlow
shunsunsun/word2vec-doc2vec
An extension of word2vec to efficiently represent new text as vectors. New text can be query, sentence and paragraph.
shunsunsun/zhihu-python
获取知乎内容信息,包括问题,答案,用户,收藏夹信息