Pinned Repositories
csc2431-project
Unsupervised DNA Methylation Analysis
csc2541-ml-project
Modeling Uncertainty in RNNs for Time Series Forecasting
DeepLoc-VAE
Semi-supervised VAE model for protein localization prediction from microscopy images
graph-alignment
Siamese Neural Network Architecture for Graph Alignment
ldsc
LD Score Regression (LDSC)
magenpy
Modeling and Analysis of (Statistical) Genetics data in python
stratified-vs-mega-gwas
A comparative analysis of stratified vs. mega analysis strategies for GWAS.
tokyo-symposium-2024
Tokyo Symposium on Genomic Medicine (2024)
viprs
Variational Inference of Polygenic Risk Scores
viprs-paper
Reproducible code for running the analyses in the paper "Fast and Accurate Bayesian Polygenic Risk Modeling with Variational Inference" (2022)
shz9's Repositories
shz9/viprs
Variational Inference of Polygenic Risk Scores
shz9/magenpy
Modeling and Analysis of (Statistical) Genetics data in python
shz9/csc2541-ml-project
Modeling Uncertainty in RNNs for Time Series Forecasting
shz9/viprs-paper
Reproducible code for running the analyses in the paper "Fast and Accurate Bayesian Polygenic Risk Modeling with Variational Inference" (2022)
shz9/graph-alignment
Siamese Neural Network Architecture for Graph Alignment
shz9/ldsc
LD Score Regression (LDSC)
shz9/tokyo-symposium-2024
Tokyo Symposium on Genomic Medicine (2024)
shz9/csc2431-project
Unsupervised DNA Methylation Analysis
shz9/DeepLoc-VAE
Semi-supervised VAE model for protein localization prediction from microscopy images
shz9/neutral-phenotype-model
Scripts and data for our manuscript on "Evolutionary dynamics of neutral phenotypes under DNA substitution models"
shz9/stratified-vs-mega-gwas
A comparative analysis of stratified vs. mega analysis strategies for GWAS.
shz9/unbiased-ldsc
Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment
shz9/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
shz9/Getting-and-Cleaning-Data-Course-Project
shz9/msp-gen
Driver scripts for genealogy simulations with msprime
shz9/msprime
Simulate genealogical trees and genomic sequence data using population genetic models
shz9/mvbin
A script for generating multivariate and correlated binary data.
shz9/phasedibd
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
shz9/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
shz9/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
shz9/shz9.github.io
Personal website
shz9/single-neuron-experiment
Experiments with teaching a single neuron the genetic code
shz9/vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication