siboles
I am a biomedical engineer with an interest in the mechanics of soft tissue. I develop software to enable data analysis from experiment and simulation.
University of CalgaryCalgary, Alberta, Canada
Pinned Repositories
AttentionSiteDTI
This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representation of Ligands and 3D Structure of Protein Binding Sites"
bioMultiScale
Automates the multiscale finite element modelling process for tissue to cellular scales. The original implementation was aimed at usage in articular cartilage, but may be extended to other applications.
carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
conda-publish-action
Github Action to deploy conda package to Anaconda repository
conda-recipes
dotfiles
My dotfiles
lsmgridtrack
A Python module to enable deformable image registration of 3D images with photobleached grids under mechanical loading.
PoroMech
A Python module for processing and visualizing poroelastic/viscoelastic material testing data.
pyCellAnalyst
pyCellAnalyst is a Python module for 3D reconstruction and deformation analysis of biological objects.
pyFEBio
A Python API for FEBio
siboles's Repositories
siboles/pyCellAnalyst
pyCellAnalyst is a Python module for 3D reconstruction and deformation analysis of biological objects.
siboles/pyFEBio
A Python API for FEBio
siboles/lsmgridtrack
A Python module to enable deformable image registration of 3D images with photobleached grids under mechanical loading.
siboles/bioMultiScale
Automates the multiscale finite element modelling process for tissue to cellular scales. The original implementation was aimed at usage in articular cartilage, but may be extended to other applications.
siboles/PoroMech
A Python module for processing and visualizing poroelastic/viscoelastic material testing data.
siboles/AttentionSiteDTI
This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representation of Ligands and 3D Structure of Protein Binding Sites"
siboles/carlworld-beamer-slide-theme
Carl Compliant Beamer slide theme
siboles/conda-publish-action
Github Action to deploy conda package to Anaconda repository
siboles/conda-recipes
siboles/dotfiles
My dotfiles
siboles/github-move
siboles/hexapy
siboles/gridap_tutorials
Start solving PDEs in Julia with Gridap.jl
siboles/kickstart.nvim
A launch point for your personal nvim configuration
siboles/my_neovim
My neovim configs.
siboles/pcm_segmenter
2-D segmentation and analysis of the pericellular matrix surrounding chondrocytes
siboles/pyGenLesion
Generate tetrahedral meshes of a simplified medial knee compartment with an arbitrary number of cartilage lesions with arbitrary size and depth.
siboles/resonant_lsm
siboles/rtd-tutorial
siboles/tetmesh
Wraps a C++ binary for creating high-quality tetrahedral meshes from polygon surfaces using the Computational Geometry Algorithms Library (CGAL).