Pinned Repositories
sabatini-datajoint-pipeline
3DBrainVisualization
cleverhans
An adversarial example library for constructing attacks, building defenses, and benchmarking both
COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
datajoint-elements
DataJoint Elements is a collection of curated computational workflows for neurophysiology experiments.
element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
element-facemap
DataJoint Element for behavioral analysis with Facemap
Neural-Data-Augmentation-Model
Project for Beng 189 class at UCSD. Data augmentation on neural data for Neural network
Neural-Decoding-of-M1-neuron
Created a novel method to augment neural spike data to build a large training set from a limited sample size. Implemented Kalman filter model to predict arm position based on neural activity, and used our augmented dataset to improve model accuracy.
workflow-array-ephys
Example DataJoint workflow of `element-array-ephys` - NIH U24
sidhulyalkar's Repositories
sidhulyalkar/cleverhans
An adversarial example library for constructing attacks, building defenses, and benchmarking both
sidhulyalkar/datajoint-elements
DataJoint Elements is a collection of curated computational workflows for neurophysiology experiments.
sidhulyalkar/datajoint-utilities
A general purpose repository containing all generic tools/utilities surrounding the DataJoint ecosystem. These can be candidates for DataJoint plugins
sidhulyalkar/element-array-ephys
DataJoint Element for Extracellular Array Electrophysiology - NIH U24
sidhulyalkar/element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
sidhulyalkar/element-facemap
DataJoint Element for behavioral analysis with Facemap
sidhulyalkar/workflow-array-ephys
Example DataJoint workflow of `element-array-ephys` - NIH U24
sidhulyalkar/djlab-docker
A docker image optimized for running a JupyterLab environment with DataJoint Python.
sidhulyalkar/djsciops-cicd
sidhulyalkar/ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
sidhulyalkar/element-animal
DataJoint Element for Animal Management - NIH U24
sidhulyalkar/element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p
sidhulyalkar/element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
sidhulyalkar/element-event
DataJoint Element for event-based behavior experiments
sidhulyalkar/element-interface
Common functions for the DataJoint Elements
sidhulyalkar/element-lab
DataJoint Element for Lab Management - NIH U24
sidhulyalkar/element-miniscope
DataJoint Element for miniscope calcium imaging analysis with CaImAn
sidhulyalkar/element-optogenetics
DataJoint Element for optogenetic experiments
sidhulyalkar/element-session
DataJoint Element for Session Management - NIH U24
sidhulyalkar/facemap
Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
sidhulyalkar/microns_phase3_nda
nda schema for MICrONS phase3
sidhulyalkar/miniconda3-docker
A minimal base docker image with conda.
sidhulyalkar/np_data_validation
Tools for validating data integrity across the lifecycle of an ecephys session file
sidhulyalkar/NYU-DLSP20
NYU Deep Learning Spring 2020
sidhulyalkar/probeinterface
Python package to handle probe layout, geometry and wiring to device.
sidhulyalkar/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
sidhulyalkar/sciops-dev_sabatini
sidhulyalkar/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
sidhulyalkar/suite2p
cell detection in calcium imaging recordings
sidhulyalkar/workflow-deeplabcut
Example DataJoint workflow for behavioral analysis with DeepLabCut