silastittes

silastittes's Stars

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl13440

• RILAB/mop

  Simple tool for capturing alignment regions with sufficient quality for genotyping.

  Language:Python223

• sgkit-dev/sgkit

  Scalable genetics toolkit

  Language:Python22732

• eaton-lab/toytree

  A minimalist tree plotting library using toyplot graphs

  Language:Jupyter Notebook16528

• harvardinformatics/degenotate

  Language:Python404

• popsim-consortium/stdpopsim

  A library of standard population genetic models

  Language:Python12286

• fulcrumgenomics/guide-counter

  A better, faster way to count guides in CRISPR screens.

  Language:Rust273

• sstadick/timfmt

  A small utility for formatting things the way Tim prefers.

  Language:Rust4

• sstadick/hck

  A sharp cut(1) clone.

  Language:Rust69319

• ANGSD/NgsRelate

  Language:C++4011

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python23.1k4.3k

• rossibarra/ibd_maize

  ne estimates from ibd

  Language:Python41

• standard-aaron/palm

  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies

  Language:Python163

• cdmuir/evolution-shiny

  Shiny apps for BIOL 470: Evolutionary Biology at UH Mānoa

  Language:R4

• MesserLab/SLiM

  SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

  Language:C++16030

• alachins/raisd

  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors

  Language:C3313

• jhkorhonen/MOODS

  MOODS: Motif Occurrence Detection Suite

  Language:C++9612

• voichek/kmersGWAS

  A library for running k-mers based GWAS

  Language:C++10024

• cggh/scikit-allel

  A Python package for exploring and analysing genetic variation data

  Language:Jupyter Notebook28749

• kr-colab/diploSHIC

  feature-based deep learning for the identification of selective sweeps

  Language:Python5014

• gonum/gonum

  Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more

  Language:Go7.5k536

• mishaploid/Bo-demography

  Demographic analysis of Brassica oleracea

  Language:Python102

• rmcelreath/statrethinking_winter2019

  Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019

  2k392

• ybrandvain/mariaPlot

  quick plot of pr deaths by time

  Language:R11

• keras-team/keras

  Deep Learning for humans

  Language:Python61.6k19.4k

• ResearchComputing/New_User_Seminar

  Materials for the RC New User Seminar

  102

• lh3/wgsim

  Reads simulator

  Language:C26291

• dkahle/dirichlet

  A light weight package for the (d/r)dirichlet functions for the Dirichlet distribution in R

  Language:R62

• cooplab/popgen-notes

  Population genetics notes

  Language:PostScript634130

• kr-colab/discoal

  discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

  Language:TeX4810