Pinned Repositories
cathsm-client
Software to run protein structure modelling pipeline (CATH/SWISS-MODEL)
cathsm-server
Backend server for protein structure modelling pipeline (CATH/SWISS-MODEL)
bio-pdbx
Simple parser for PDB XML header files in Perl
biojs-vis-pdbviewer
PDB structure viewer (BioJS 2.0)
Catalyst-ActionRole-Tabs
Add tabs to Catalyst controller actions
cathpy
Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)
ipmi-check-temperature
Use ipmitool to monitor room(ish) temperature
sge-monitor
Simple web-based app to monitor SGE activity and usage
cath-todo
Issues relating to the CATH protein structure classification web pages
cath-tools
Protein structure comparison tools such as SSAP and SNAP
sillitoe's Repositories
sillitoe/sge-monitor
Simple web-based app to monitor SGE activity and usage
sillitoe/ipmi-check-temperature
Use ipmitool to monitor room(ish) temperature
sillitoe/membrane-funfams
FunFam data for Orengo/Reuter collaboration
sillitoe/cathpy
Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)
sillitoe/3Cnet
sillitoe/3d-beacons-specifications
sillitoe/BioHackathon
Repository with information about the BioHackathon hosted in Paris in Nov 2018
sillitoe/bioschemas.github.io
Files for the Bioschemas website.
sillitoe/cath-human-funfam-mda
Retrieve human funfam entries from CATH (including MDA information)
sillitoe/cath-nr-generate-clusters
sillitoe/cath-structural-cluster-example
sillitoe/d3-sankey
Visualize flow between nodes in a directed acyclic network.
sillitoe/ddexreader
sillitoe/dircolors-solarized
This is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.
sillitoe/EAT
Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.
sillitoe/embed.protein.properties
sillitoe/mafft_problem
sillitoe/Merizo
Fast and accurate protein domain segmentation using Invariant Point Attention
sillitoe/mojolicious-plugin-oauth2-server
Mojolicious plugin to make it a little easier to implement an OAuth2 authorization/resource server
sillitoe/mutfam.github.io
Mutfam github pages
sillitoe/net-oauth2-authorizationserver
Module to implement core functions of an OAuth2 authorization server
sillitoe/nextjs-blog
sillitoe/orengo-baker-funfams
Generating 3D protein models from Functional Family alignments
sillitoe/Path-Tiny
File path utility
sillitoe/prettyconf
A extensible library for Settings/Code separation
sillitoe/stockholm-format-contact-prediction
Discussion on how to add contact predictions to STOCKHOLM format alignment files
sillitoe/ted-web
TED: Automated Domain Parsing of AlphaFold DB
sillitoe/test-github-pages
testing github pages
sillitoe/test-python-api
sandbox to have a look at python API frameworks
sillitoe/xml-rabbit-test-export
using XML::Rabbit to export documents as XML