Pinned Repositories
binf
A Python library for Bayesian inference. Easily stitch together your posterior from components and sample from it using Gibbs sampling and Hamiltonian Monte Carlo (HMC)!
ensemble_hic
Code for the article "Bayesian inference of chromatin structure ensembles from population-averaged contact data" (PNAS, 2020)
pandemic-sim
A toy infectious disease outbreak simulation
probnum
Probabilistic Numerics in Python.
rexfw
A Python / MPI implementation of Replica Exchange (aka Parallel Tempering) which lets you run hundreds of replicas on a computing cluster.
simeoncarstens's Repositories
simeoncarstens/ensemble_hic
Code for the article "Bayesian inference of chromatin structure ensembles from population-averaged contact data" (PNAS, 2020)
simeoncarstens/pandemic-sim
A toy infectious disease outbreak simulation
simeoncarstens/binf
A Python library for Bayesian inference. Easily stitch together your posterior from components and sample from it using Gibbs sampling and Hamiltonian Monte Carlo (HMC)!
simeoncarstens/probnum
Probabilistic Numerics in Python.
simeoncarstens/rexfw
A Python / MPI implementation of Replica Exchange (aka Parallel Tempering) which lets you run hundreds of replicas on a computing cluster.
simeoncarstens/covid19_logreg
simeoncarstens/ensemble_hic-tfp
TensorFlow Probability implementation of the model in Carstens et al., PNAS (2020)
simeoncarstens/fix-python
A simple CLI tool to allow you to use Python "normally" in NixOS
simeoncarstens/install-nix-action
Installs Nix on GitHub Actions for the supported platforms: Linux and macOS.
simeoncarstens/kelloggs
Serial cereals
simeoncarstens/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
simeoncarstens/nixpkgs
Nix Packages collection
simeoncarstens/pipestat
Pipeline results reporting package
simeoncarstens/probability
Probabilistic reasoning and statistical analysis in TensorFlow
simeoncarstens/remote_spark_minimal
simeoncarstens/simeoncarstens.github.io
Personal blog & website