simonpenel/fasta_split

Split a fasta file into several fasta file

Split a fasta file into several fasta files

https://crates.io/crates/fasta_split

https://github.com/simonpenel/fasta_split/

Install

cd fasta_split

cargo build --release

or cargo install fasta_split

Run

target/release/fasta-split -h

or

fasta-split -h

Usage

Usage: fasta_split [OPTIONS] <FASTA_FILE> <FAM_FILE>

Arguments:
  <FASTA_FILE>  FASTA INPUT (file path or stdin)
  <FAM_FILE>    FAM_FILE INPUT (file path)

Options:
      --orphans  Include orphan families
  -h, --help     Print help
  -V, --version  Print version

Family file format

A tabular file:

FAM1  seqname2
FAM1  seqname3
FAM1  seqname4
...
FAM10  seqname101
FAM10  seqname102
FAM10  seqname103
FAM10  seqname104`