Pinned Repositories
fast52fastq
Extracts fastq files from ONT fast5 files
Font.js
This library adds a new Font() object to the JavaScript toolbox, similar to new Image() for images
iCANDY
iCANDY for reviewers only
in_silico_pcr
Script to run an in silico pcr for a set of primer pairs on an assembly
pairwise_difference_count
Counts pairwise differences between sequences in DNA alignments
PhyloCanvas
Phylogenetic tree visualisation for the web.
pyjar
A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al
SKA
Split Kmer Analysis
tree_gubbins
Clustering of isolates on a phylogenetic tree using a spatial scan statistic
simonrharris's Repositories
simonrharris/SKA
Split Kmer Analysis
simonrharris/pyjar
A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al
simonrharris/in_silico_pcr
Script to run an in silico pcr for a set of primer pairs on an assembly
simonrharris/tree_gubbins
Clustering of isolates on a phylogenetic tree using a spatial scan statistic
simonrharris/pairwise_difference_count
Counts pairwise differences between sequences in DNA alignments
simonrharris/PhyloCanvas
Phylogenetic tree visualisation for the web.
simonrharris/fast52fastq
Extracts fastq files from ONT fast5 files
simonrharris/Font.js
This library adds a new Font() object to the JavaScript toolbox, similar to new Image() for images
simonrharris/iCANDY
iCANDY for reviewers only
simonrharris/jsPDF
Generate PDF files in JavaScript. HTML5 FTW.
simonrharris/map_resistome
simonrharris/minimap2
A fast sequence mapping and alignment program
simonrharris/minimlst
simonrharris/pdfkit
HTML+CSS to PDF using wkhtmltopdf
simonrharris/phandangoExampleData
The data underlying the examples on https://jameshadfield.github.io/phandango
simonrharris/robin-hood-hashing
Fast & memory efficient hashtable based on robin hood hashing for C++14
simonrharris/treecompare
scripts for comparing a tree to a gold standard