Pinned Repositories
binding-sim-edu
metrics-calculator
[pre-release] Calculate plot metrics from spatial agent data
nbsv
simularium-data-library
View lists of .simularium files in public AWS S3 buckets and load them in the Simularium viewer.
simularium-viewer
NPM package to view Simularium trajectories in 3D
simularium-website
Front end website for the Simularium project, includes the Simularium viewer
simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
subcell-pipeline
Simulation, analysis, and visualization functionality for subcellular models
subcell-website
Website for subcellular models
vivarium-models
Simularium's Repositories
simularium/simularium-website
Front end website for the Simularium project, includes the Simularium viewer
simularium/simulariumio
Python package that converts simulation outputs to the format consumed by the Simularium viewer website
simularium/simularium-viewer
NPM package to view Simularium trajectories in 3D
simularium/subcell-pipeline
Simulation, analysis, and visualization functionality for subcellular models
simularium/subcell-website
Website for subcellular models
simularium/binding-sim-edu
simularium/metrics-calculator
[pre-release] Calculate plot metrics from spatial agent data
simularium/nbsv
simularium/simularium-data-library
View lists of .simularium files in public AWS S3 buckets and load them in the Simularium viewer.
simularium/simularium-engine
C++ back end application that interfaces with biological simulation engines and serves simulation data to the front end website
simularium/vivarium-models
simularium/Cytosim
A fork of Cytosim, a cytoskeleton simulation engine (from https://gitlab.com/f-nedelec/cytosim)
simularium/medyan
simularium/PhysiCell
PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.
simularium/readdy-models
Tools for building computational biology models in ReaDDy.
simularium/simularium-autoconversion
simularium/simularium-lambdas
AWS Lambda functions for Simularium
simularium/simularium-planning
simularium/trajectory-compare
Prototype web pages for comparing simulation trajectories.