sina-mansour/UKB-connectomics

Issues

• Questions about the temporary_dir and output_dir

  #43 opened 8 months ago by OpsCharles
  0

• Ask for the order of regions in pre-calculated structural connectivity matrix

  #41 opened a year ago by hitrp
  3

• Ask for the data used for constructing functional connectivity matrix

  #42 opened a year ago by hitrp
  1

• UKB storage to upload processed bulk data

  #11 opened a year ago by sina-mansour
  3

• Performing Connectome Spatial Smoothing

  #22 opened a year ago by sina-mansour
  2

• tcksample 4D image input

  #29 opened a year ago by Lestropie
  0

• tck2connectome

  #30 opened a year ago by AndrewZalesky
  6

• Documentation: Link to relevant MRtrix3 GitHub project

  #37 opened a year ago by Lestropie
  1

• Including a more detailed list of software versions used.

  #39 opened a year ago by sina-mansour
  1

• MRtrix3 code version

  #38 opened a year ago by Lestropie
  2

• Readme landing page

  #40 opened a year ago by sina-mansour
  1

• Combining cortical and subcortical atlases for SC mapping

  #20 opened 2 years ago by sina-mansour
  3

• Remote storage options

  #36 opened 2 years ago by sina-mansour
  1

• Total files quota

  #35 opened 3 years ago by sina-mansour
  1

• Connectome mapping execution duration

  #21 opened 3 years ago by sina-mansour
  50

• Storage formats for exported intermediate data

  #23 opened 3 years ago by Lestropie
  1

• MSMT CSD runtime

  #14 opened 3 years ago by sina-mansour
  5

• Missing rotated bvecs

  #33 opened 3 years ago by sina-mansour
  3

• Using spartan RAM disk

  #34 opened 3 years ago by sina-mansour
  2

• SIFT2 weights

  #24 opened 3 years ago by sina-mansour
  18

• 5ttgen error on spartan

  #32 opened 3 years ago by sina-mansour
  4

• Using crop_at_gmwmi

  #31 opened 3 years ago by sina-mansour
  2

• tck2connectome unexpected mean output

  #28 opened 3 years ago by sina-mansour
  3

• tcksample sampling strategy

  #25 opened 3 years ago by Lestropie
  2

• Strange multiplier in combined atlases

  #27 opened 3 years ago by sina-mansour
  1

• Tractography pipeline (tckgen)

  #9 opened 3 years ago by sina-mansour
  3

• SIFT2 processing "mask"

  #26 opened 3 years ago by Lestropie
  1

• tckgen streamline count + statistics reporting

  #16 opened 3 years ago by AndrewZalesky
  5

• reporting streamline termination stats

  #17 opened 3 years ago by AndrewZalesky
  7

• rigid linear transformations of atlases

  #19 opened 3 years ago by sina-mansour
  1

• Multiple tractograms

  #18 opened 3 years ago by Lestropie
  7

• Connectivity measures to be sampled

  #10 opened 3 years ago by sina-mansour
  14

• Tensor metrics from UKB vs computing

  #15 opened 3 years ago by sina-mansour
  10

• The alignment of the diffusion and structural MRI spaces

  #7 opened 3 years ago by sina-mansour
  26

• 5 tissue segmentation approach

  #6 opened 3 years ago by sina-mansour
  7

• Use rotated bvecs

  #12 opened 3 years ago by Lestropie
  1

• Group average response function

  #3 opened 3 years ago by sina-mansour
  5

• FIRST file paths

  #13 opened 3 years ago by Lestropie
  1

• Tractography along subcortex

  #8 opened 3 years ago by sina-mansour
  5

• Adding mtnormalise

  #5 opened 3 years ago by sina-mansour
  1

• Mask dilation before running CSD

  #4 opened 3 years ago by sina-mansour
  3

• Scratch file system usage

  #2 opened 3 years ago by sina-mansour
  2

• MRtrix3 python API

  #1 opened 3 years ago by sina-mansour
  2