This repository contains all scripts relevant for G2G analysis on Epstein–Barr virus (EBV) in HIV patients. For EBV data preparation, please see gitlab.com/ezlab/vir_var_calling. Results are available here: https://doi.org/10.5281/zenodo.4011995.
In this order:
./make_1_computation.sh
: runs the G2G analysis (= many GWASs)../make_2_results.sh
: extracts top results../make_3_genomic_lambda.sh
: computes the genomic lambdas for all GWASs../make_4_figures_tables.sh
: makes figures + tables for report.
Note: All bash files have some parameters to choose in the header.