/CeleScope

Single Cell Analysis Pipelines

Primary LanguagePythonMIT LicenseMIT

Introduction

CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Mirror

If you have problems connecting to github, try: https://gitee.com/singleron-rd/celescope/

Documentation

User guide

Support

Please use the issue tracker for questions and malfunctions.

About

CeleScope is currently developed by Singleron Biotechnologies.

www.singleron.bio

Note

We are rewriting CeleScope pipelines using nextflow to achieve better scalability and reproducibility. For a list of available pipelines, see nf-celescope.