sirius777coder's Stars
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
thu-info-community/thu-info-app
An APP aimed at integrating various sources of campus information, developed with React Native
kvfrans/jax-diffusion-transformer
Implementation of Diffusion Transformer (DiT) in JAX
pylelab/USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
karpathy/build-nanogpt
Video+code lecture on building nanoGPT from scratch
yang-song/score_sde
Official code for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
JustinDoIt/lab-training
实验室新人培训资料
rdkit/rdkit
The official sources for the RDKit library
maabuu/posebusters
Plausibility checks for generated molecule poses.
karpathy/nn-zero-to-hero
Neural Networks: Zero to Hero
LucaOne/LucaOne
The LucaOne’s code, including model code and pre-training code.
BILAB/pdb2oniom
A python implementation of pdb2oniom for QM/MM (ONIOM) calculations
westlake-repl/SaprotHub
SaprotHub: Making Protein Modeling Accessible to All Biologists
twopin/CAMP
predicting peptide-protein interactions
aqlaboratory/genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
BGI-SynBio/PyMOL-PUB
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
Zuricho/AlphaFold3_Result_Visualize
A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
lhatsk/AlphaLink
AlphaLink: Integrating crosslinking MS data into OpenFold
prescient-design/walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
LC044/WeChatMsg
提取微信聊天记录,将其导出成HTML、Word、Excel文档永久保存,对聊天记录进行分析生成年度聊天报告,用聊天数据训练专属于个人的AI聊天助手
avirshup/py3dmol
yuweihao/MambaOut
MambaOut: Do We Really Need Mamba for Vision?
Junjie-Zhu/IDPFold
IDPFold test version
flatironinstitute/DeepFRI
Deep functional residue identification
bioinf-mcb/Metagenomic-DeepFRI
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Zuricho/alphafold3_facts
Collection of trials, discussions, and tricks of AlphaFold3.
ZiyaoLi/AlphaFold3
To become an implementation of AlphaFold3 based on Uni-Fold.
OATML-Markslab/ProteinNPT
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
irudnyts/openai
An R package-wrapper around OpenAI API
NVlabs/edm
Elucidating the Design Space of Diffusion-Based Generative Models (EDM)