/bedmeth2bedgraph

Small tool to convert bedmethyl format to custom bedgraph output

Primary LanguageRustMIT LicenseMIT

bedmeth2bedgraph

This Rust program processes lines from a given bedmethyl input file in parallel and filters them based on certain criteria. It utilizes the Rayon crate for parallel processing.

Features

  • Reads lines from a text file.
  • Filters lines based on specific criteria.
  • Processes lines in parallel using Rayon.
  • Outputs the processed lines.

Installation

  1. Make sure you have Rust and Cargo installed. If not, you can install them from here.

  2. Clone this repository:

git clone https://github.com/sirselim/bedmeth2bedgraph
  1. Navigate to the project directory:
cd bedmeth2bedgraph
  1. Build the project:
cargo build --release

Usage

Run the compiled binary with the path to the input file as a command-line argument. For example:

./target/release/bedmethyl2bedgraph input.txt

Replace input.txt with the path to your input file.

License

This project is licensed under the MIT License - see the LICENSE file for details.