sjneph

Automated-Power-Test-Station

Automated Test Station Code from 2004 era

bedops

:microscope: BEDOPS: high-performance genomic feature operations

byte-store

Generate and explore upper triangular and square matrices of 1-byte values

cutnm

footprinting2012

DNaseI Footprinting

genotyping

Call genotypes directly from epigenomics datasets

modwt

An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

mss

All Maximal Scoring Subsequences algorithm

rhmm

Discrete HMM

satfactor

Convert an integer factorization problem into a boolean SATISFIABILITY problem.

sjneph/modwt

An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

sjneph/satfactor

Convert an integer factorization problem into a boolean SATISFIABILITY problem.

sjneph/cutnm

sjneph/mss

All Maximal Scoring Subsequences algorithm

sjneph/rhmm

Discrete HMM

sjneph/Automated-Power-Test-Station

Automated Test Station Code from 2004 era

sjneph/bedops

:microscope: BEDOPS: high-performance genomic feature operations

sjneph/byte-store

Generate and explore upper triangular and square matrices of 1-byte values

sjneph/footprinting2012

DNaseI Footprinting

sjneph/genotyping

Call genotypes directly from epigenomics datasets

sjneph/metamask-extension

:globe_with_meridians: :electric_plug: The MetaMask browser extension enables browsing Ethereum blockchain enabled websites

sjneph/network-motifs

network-motifs

sjneph/soda

Python-based UCSC genome browser snapshot-taker and gallery-maker

sjneph/stream-plots

Streaming plotting programs: scatterplot, histogram, sparkline, and timeline