Pinned Repositories
Automated-Power-Test-Station
Automated Test Station Code from 2004 era
bedops
:microscope: BEDOPS: high-performance genomic feature operations
byte-store
Generate and explore upper triangular and square matrices of 1-byte values
cutnm
footprinting2012
DNaseI Footprinting
genotyping
Call genotypes directly from epigenomics datasets
modwt
An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.
mss
All Maximal Scoring Subsequences algorithm
rhmm
Discrete HMM
satfactor
Convert an integer factorization problem into a boolean SATISFIABILITY problem.
sjneph's Repositories
sjneph/modwt
An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.
sjneph/satfactor
Convert an integer factorization problem into a boolean SATISFIABILITY problem.
sjneph/cutnm
sjneph/mss
All Maximal Scoring Subsequences algorithm
sjneph/rhmm
Discrete HMM
sjneph/Automated-Power-Test-Station
Automated Test Station Code from 2004 era
sjneph/bedops
:microscope: BEDOPS: high-performance genomic feature operations
sjneph/byte-store
Generate and explore upper triangular and square matrices of 1-byte values
sjneph/footprinting2012
DNaseI Footprinting
sjneph/genotyping
Call genotypes directly from epigenomics datasets
sjneph/metamask-extension
:globe_with_meridians: :electric_plug: The MetaMask browser extension enables browsing Ethereum blockchain enabled websites
sjneph/network-motifs
network-motifs
sjneph/soda
Python-based UCSC genome browser snapshot-taker and gallery-maker
sjneph/stream-plots
Streaming plotting programs: scatterplot, histogram, sparkline, and timeline