Pinned Repositories
alignfigR
Create sequence alignment figures in R
alignment_filtering
Code and data for "Limited Utility of Residue Masking for Positive-Selection Inference," by SJS, ETD, COW.
datascience_for_biologists
Course materials for Rowan University Course "Data Science for Biologists"
dnds_1rate_2rate
Repository for manuscript "A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation" by SJS, SW, COW.
introverse
Documentation for beginners entering R and the tidyverse
phyphy
Python HyPhy: Facilitating HyPhy execution and parsing
publications
All publications in PDF
pyvolve
Python library to simulate evolutionary sequence data
sam-kasten-memoirs
English translation of the memoirs of Sam Kasten (Kestin), beloved Yiddish theater comedian
UTbiocomputing2015
Peer-led working group in Biological Computing at UT Austin, Spring 2015
sjspielman's Repositories
sjspielman/pyvolve
Python library to simulate evolutionary sequence data
sjspielman/introverse
Documentation for beginners entering R and the tidyverse
sjspielman/datascience_for_biologists
Course materials for Rowan University Course "Data Science for Biologists"
sjspielman/phyphy
Python HyPhy: Facilitating HyPhy execution and parsing
sjspielman/alignfigR
Create sequence alignment figures in R
sjspielman/dragon
Deep time Redox Analysis of the Geobiology Ontology Network
sjspielman/ds4b.materials
Apps and useful student functions for BIOL01301, packaged up
sjspielman/leisr_validation
Code accompanying LEISR manuscript
sjspielman/evolfoRces
Simulate population genetics simulations for the classroom
sjspielman/sam-kasten
Landing page for Sam Kasten legacy
sjspielman/sam-kasten-memoirs
English translation of the memoirs of Sam Kasten (Kestin), beloved Yiddish theater comedian
sjspielman/wmeecv_hsab_analysis
sjspielman/publications
All publications in PDF
sjspielman/2023-chop-training-demo
Repository for live demos associated with 2023 CHOP Workshop on code review
sjspielman/cb2r-ds-summer2020
CB2R Data Science Workshop
sjspielman/eeg_classroom_app
App for Dr. Hunt at Rowan University
sjspielman/endocytosis-slims-screen
Screen disordered proteom for endocytosis motifs
sjspielman/endocytosis_slims
sjspielman/lacawac2017
Workshop materials for Functional Genomics Workshop 2017 at Lacawac Sanctuary
sjspielman/Omega_MutSel
Code and data for Spielman and Wilke, The relationship between dN/dS and scaled selection coefficients, Mol. Biol. Evol. 2015.
sjspielman/OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
sjspielman/OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
sjspielman/OpenScPCA-analysis
An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
sjspielman/playtpusman
sjspielman/rrp-workshop-exercises
Materials for reproducible research practices workshop exercises.
sjspielman/sjspielman.github.io
sjspielman/spellcheck
This repository contains a Docker image with the R spelling package
sjspielman/tasty
Template repository that can be cloned to create repo for administering a specific training workshop
sjspielman/training-modules
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
sjspielman/types.of.plots
Shiny app demonstrating common dataviz with penguins and ggplot2