sjust-seerbio
Staff engineer at Seer, working to develop tools for handling extremely large proteomics experiments.
Seer, IncPortland, OR
Pinned Repositories
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
crema
Confidence Estimation for Mass Spectrometry Proteomics
seer-pas-sdk
Python SDK for Seer PAS
action-black
Run black with Reviewdog :dog:
crema
Confidence Estimation for Mass Spectrometry Proteomics
matrix-matched-calcurves
Development fork of lindsaypino/matrix-matched_calcurves
mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
nf-encyclopedia
A NextFlow pipeline for chromatogram library DIA proteomics workflows
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
sjust-seerbio's Repositories
sjust-seerbio/action-black
Run black with Reviewdog :dog:
sjust-seerbio/crema
Confidence Estimation for Mass Spectrometry Proteomics
sjust-seerbio/mokapot
Fast and flexible semi-supervised learning for peptide detection in Python
sjust-seerbio/nf-encyclopedia
A NextFlow pipeline for chromatogram library DIA proteomics workflows
sjust-seerbio/pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
sjust-seerbio/matrix-matched-calcurves
Development fork of lindsaypino/matrix-matched_calcurves