skannan4
MD/PhD student at Johns Hopkins. Cardiomyocytes are the best cell type and I'm gonna make a ton of them in a dish.
Pinned Repositories
cm-dysregulation
All code and workspaces necessary to replicate our work on trajectory reconstruction in endogenous and PSC-derived cardiomyocytes.
cm-entropy-score
All code and workspaces necessary to replicate our work on entropy score to predict CM maturation status
satellite-cell-transplantation
All code and workspaces necessary to replicate our work on transplantation of PAX7+ satellite cells.
wls
All code and workspaces necessary to replicate our work on studying the role of second heart field development by Wnt secretion.
annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk
dsg2-mut
All code and workspaces necessary to replicate our work looking at DSG2 mutant vs control iPSC-CMs.
singleCellNet
SingleCellNet: classify single cells across species and platforms
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
trpc6-dmd
Processed data to replicate findings in our study on the role of the TRPC6 ion channel in DMD.
web_log
Scripts, data, and files associated with www.sinabooeshaghi.com web log
skannan4's Repositories
skannan4/cm-dysregulation
All code and workspaces necessary to replicate our work on trajectory reconstruction in endogenous and PSC-derived cardiomyocytes.
skannan4/trpc6-dmd
Processed data to replicate findings in our study on the role of the TRPC6 ion channel in DMD.
skannan4/satellite-cell-transplantation
All code and workspaces necessary to replicate our work on transplantation of PAX7+ satellite cells.
skannan4/wordlesolver
Code and visualizations of my goofing around with a Wordle solver
skannan4/dsg2-mut
All code and workspaces necessary to replicate our work looking at DSG2 mutant vs control iPSC-CMs.
skannan4/wls
All code and workspaces necessary to replicate our work on studying the role of second heart field development by Wnt secretion.
skannan4/cm-entropy-score
All code and workspaces necessary to replicate our work on entropy score to predict CM maturation status
skannan4/tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
skannan4/annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk
skannan4/web_log
Scripts, data, and files associated with www.sinabooeshaghi.com web log
skannan4/singleCellNet
SingleCellNet: classify single cells across species and platforms