no file named 1.cns.out

[aureliendejode]

Hi,
I used arrow_grid (without the grid option because I have trouble with that one see my other Issue "Using arrow_grid on slurm") and it worked fine until I got the following error.
Here is the end of the slurm out file:
[INFO] Arrow operating on tig00067068_1:9172-9183
[INFO] Output files completed.
[INFO] Analysis completed.
[INFO] Finished.
[INFO] exiting with return code 0 in 36386.12 sec.
Computing coverage stats
Checking success
cat: *1.cns.out: Aucun fichier ou dossier de ce type
cat: *1.cns.out: Aucun fichier ou dossier de ce type
Error: 1 failed, please check 1.cns.out for errors and try again

I checked and could not find any .cns.out file.

Do you know what happened ?

Thanks

[skoren]

Are you running this off grid? As it says in the readme, we've only tested on SGE/Slurm so this has had limited testing. I think the issue is the output got sent to the screen and not a log file that subsequent steps expect. I committed a fix to the repo that should address this.

[aureliendejode]

Yes for this I tried to run it off grid. Thanks Le ven. 4 juin 2021 à 17:07, Sergey Koren ***@***.***> a écrit :

…

Are you running this off grid? As it says in the readme, we've only tested on SGE/Slurm so this has had limited testing. I think the issue is the output got sent to the screen and not a log file that subsequent steps expect. I committed a fix to the repo that should address this. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#10 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABOTBS6W272KPAJJJ2AUYXTTRDT4TANCNFSM46CNWQTA> .