skoren

Pinned Repositories

canu
A single molecule sequence assembler for genomes large and small.
Language:C++663 54 2.3k179
CHM13
The complete sequence of a human genome
928 68 9499
HG002
A complete diploid human genome
105 12 75
Mash
Fast genome and metagenome distance estimation using MinHash
Language:C++396 33 16790
merqury
k-mer based assembly evaluation
Language:Shell294 11 14521
verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Language:Python312 18 29030
ArrowGrid
Language:Shell8 3 94
bacValidation
BAC-based validation of assemblies
Language:C6 0 13
QuiverGrid
Quiver wrapper for SGE
Language:Shell8 1 01
triobinningScripts
Scripts to reproduce TrioBinning manuscript
Language:Java17 5 45

skoren's Repositories

skoren/triobinningScripts
Scripts to reproduce TrioBinning manuscript
Language:Java17 5 45
skoren/ArrowGrid
Language:Shell8 3 94
skoren/QuiverGrid
Quiver wrapper for SGE
Language:Shell8 1 01
skoren/bacValidation
BAC-based validation of assemblies
Language:C6 0 13
skoren/NanoGrid
Nanopolish wrapper for SGE
Language:Shell4 3 01
skoren/PilonGrid
Language:Java2 1 14
skoren/verkkohic
scripts for combining verkko with hi-c data
Language:Python1 0 0
skoren/Winnowmap
Long read / genome alignment software
Language:C1 0 0
skoren/BIBM2013
Paper for BIBM2013.
1 0
skoren/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
skoren/helen
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Language:Python0 0
skoren/hifioverlapper
Language:C++0 0
skoren/Mandalorion
Analysis Pipeline to analyze Nanopore RNAseq data
Language:Python1 0
skoren/MBG
Language:C++0 0
skoren/NucFreq
Language:Python0 0
skoren/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
Language:Python0 0
skoren/segDupPlots
Language:R1 0
skoren/Simulome
Simulome, genome and mutant variant simulator.
Language:Python1 0