Issues
- 0
Possible problem with consensus step
#2304 opened by jacopoM28 - 0
reads overlap file
#2303 opened by tianjio - 0
How much storage space is required for the assembly of a large genome species?
#2302 opened by Jung19911124 - 4
no Corrected reads created
#2298 opened by lborcard - 1
how to regenerate the readNames.txt
#2299 opened by xychen233 - 1
Question: parameters for better quality data
#2300 opened by marija-kra - 1
Error: Could not establish configuration source
#2301 opened by Hufflepuff9000 - 3
Runing canu in conda environment in HPC, which one is the assembly contig file I that I should get?
#2291 opened by JWang52md - 1
Bogart BestOverlapGraph::removeLopsidedEdges
#2292 opened by alpapan - 6
reads correct with different depth but same results
#2296 opened by tianjio - 2
- 2
how to get only one contig by setting the parameter?
#2295 opened by JWang52md - 2
About the memory space and script
#2293 opened by gdmdxl - 27
Test suite errors on arm64 architecture
#2271 opened by tillea - 14
Canu can't continue where it left off after shutdown
#2289 opened by Artifice120 - 4
some canu contigs are in reverse
#2290 opened by majogalarion - 1
Correction step parameters
#2288 opened by tianjio - 5
Using Canu w/Snakemake
#2270 opened by lucyintheskyzzz - 2
Bogart Failed, Unknown Options Error
#2286 opened by bytoyo - 4
How can I optimize Canu v2.2 for the SGE Grid, Canu v2.2 crashes when there multiple hosts on SGE
#2281 opened by alvizain786 - 4
- 7
ERROR: Invalid command line option 'barcode06.fastq.gz'. Did you forget quotes around options with spaces?
#2287 opened by lucyintheskyzzz - 5
CANU & Nextflow & SLURM
#2285 opened by hbadrane - 9
ctgStore not created in a subset of samples
#2284 opened by TMAdams - 2
No contigs.fasta file
#2283 opened by Ladybug1030 - 6
- 4
Compiling on ARM architecture (Apple M2)
#2260 opened by nedelec - 8
- 10
Repeated OOM crashes with up to 1t memory
#2279 opened by barke042 - 15
Canu 2.2 stuck at trimming step
#2275 opened by SarahSaadain - 3
bubble contigs
#2278 opened by wez078 - 18
cormhap error
#2268 opened by hidvegin - 3
Decreasing the job size during trimming step (1-overlapper) to avoid exceeding time limit on cluster
#2277 opened by AlWa1 - 6
Ran on wrong genomeSize
#2274 opened by aglendening - 9
Triploid Genome using HiCanu
#2259 opened by lvyunyunSCI - 5
Assembly small DNA fragments (amplicons)
#2269 opened by lborcard - 2
- 6
failed to find the number of jobs in 'unitigging/0-mercounts/meryl-count.sh'
#2272 opened by lucyintheskyzzz - 5
Kmer counting (meryl-count) jobs failed
#2266 opened by Bioinformatics-rookie - 2
Excessive storage usage
#2262 opened by gunjanpandey - 8
Mhap precompute jobs failed, tried 2 times, giving up.
#2253 opened by Layla-mohd - 4
No contigs with HiFi and HiCanu
#2263 opened by emilyjunkins - 4
overlap error
#2265 opened by Bioinformatics-rookie - 1
Failed to submit compute jobs.
#2267 opened by beyondshodh - 1
Binary for new Apple M1/M2 processors?
#2261 opened by AlWa1 - 3
error in "correct" link
#2256 opened by Xinxin0314 - 0
Unusual memory fail issues on HPC
#2257 opened by caonetto - 7
The reads coverage is too low to continue
#2255 opened by yaoxkkkkk - 2
Space required
#2254 opened by sara77777777 - 1
General Canu assembler question?
#2251 opened by lucyintheskyzzz