lucyintheskyzzz

Public health microbiologist/ Algae taxonomist/ Zooplankton taxonomist

Cheetah Flower Labs

Pinned Repositories

diamond
Accelerated BLAST compatible local sequence aligner.
Language:C++1k 38 698182
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Language:C1.8k 86 1.1k409
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Language:Python00
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
Language:C00
onehealth-virus
metagenomic sequencing of viruses from mussels, oysters, seawater and marine mammals.
Language:Shell00
canu
A single molecule sequence assembler for genomes large and small.
Language:C++655 54 2.3k179
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
Language:C777 29 692168
dorado
Oxford Nanopore's Basecaller
Language:C++499 32 1.1k59
medaka
Sequence correction provided by ONT Research
Language:Python415 46 50174
NanoPlot
Plotting scripts for long read sequencing data
Language:Python422 12 34347

lucyintheskyzzz's Repositories

lucyintheskyzzz/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Language:Python00
lucyintheskyzzz/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
Language:C00
lucyintheskyzzz/onehealth-virus
metagenomic sequencing of viruses from mussels, oysters, seawater and marine mammals.
Language:Shell00