When to run ArrowGrid
KnudNorNielsen opened this issue · 1 comments
KnudNorNielsen commented
Hi,
I hope there is room for a quick basic question from a newbie.
After which step in the workflow:
- Assembling with Canu
- Scaffolding with SSPACE-LongReads
- Gab filling with PBJelly
Should I run ArrowGrid?
Best regards,
Knud
skoren commented
You want to run it at the last step as a minimum. It probably won't hurt to run it after the assembly before scaffolding as it will improve read mapping.