skoren/ArrowGrid

When to run ArrowGrid

KnudNorNielsen opened this issue · 1 comments

Hi,
I hope there is room for a quick basic question from a newbie.
After which step in the workflow:

  • Assembling with Canu
  • Scaffolding with SSPACE-LongReads
  • Gab filling with PBJelly

Should I run ArrowGrid?

Best regards,
Knud

You want to run it at the last step as a minimum. It probably won't hurt to run it after the assembly before scaffolding as it will improve read mapping.