NiBabel
Read / write access to some common neuroimaging file formats
This package provides read +/- write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, MGH and ECAT as well as Philips PAR/REC. We can read and write FreeSurfer geometry, annotation and morphometry files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.
The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays.
Website
Current documentation on nibabel can always be found at the NIPY nibabel website.
Mailing Lists
Please send any questions or suggestions to the neuroimaging mailing list.
Code
Install nibabel with:
pip install nibabel
You may also be interested in:
- the nibabel code repository on Github;
- documentation for all releases and current development tree;
- download the current release from pypi;
- download current development version as a zip file;
- downloads of all available releases.
License
Nibabel is licensed under the terms of the MIT license. Some code included with nibabel is licensed under the BSD license. Please see the COPYING file in the nibabel distribution.
Citing nibabel
Please see the available releases for the release of nibabel that you are using. Recent releases have a Zenodo Digital Object Identifier badge at the top of the release notes. Click on the badge for more information.