sky-xian

2018DSB

2018 Data Science Bowl 2nd Place Solution

acd

Code for using / reproducing ACD from the paper "Hierarchical interpretations for neural network predictions" https://arxiv.org/abs/1806.05337

ASAP

Program for the analysis and visualization of whole-slide images in digital pathology

bach2018

PYCON 2018 and BACH 2018 breast cancer histology challenge

camelyon

Reproduce the result of Camelyon16 HMS-MIT method1

CAMELYON-1

The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.

camelyon16-grand-challenge

Implementation of Camelyon'16 grand challenge

VIPER

A mirror of https://bitbucket.org/cfce/viper/overview on GitHub

sky-xian/acd

Code for using / reproducing ACD from the paper "Hierarchical interpretations for neural network predictions" https://arxiv.org/abs/1806.05337

sky-xian/ASAP

Program for the analysis and visualization of whole-slide images in digital pathology

sky-xian/CAMELYON-1

The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.

sky-xian/camelyon16-grand-challenge

Implementation of Camelyon'16 grand challenge

sky-xian/darknet

Windows and Linux version of Darknet Yolo v3 & v2 Neural Networks for object detection (Tensor Cores are used)

sky-xian/deep-histopath

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

sky-xian/deepgo

Function prediction using a deep ontology-aware classifier

sky-xian/DeeProtein

GitHub repository for "Leveraging Implicit Knowledge in Neural Networks for Functional Dissection and Engineering of Proteins"

sky-xian/deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

sky-xian/FIt-SNE

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

sky-xian/google-research

Google AI Research

sky-xian/Immune-Subtype-Clustering

This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".

sky-xian/ImmuneSubtypeClassifier

An R package for classification of immune subtypes, in cancer, using gene expression data.

sky-xian/Intro-to-rnaseq-hpc-O2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

sky-xian/keras

Deep Learning for humans

sky-xian/keras-applications

Reference implementations of popular deep learning models.

sky-xian/Mask_RCNN

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

sky-xian/MERFISH_analysis

Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

sky-xian/MIL-nature-medicine-2019

sky-xian/MSIfromHE

predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer

sky-xian/multi-label-zero-shot

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

sky-xian/openslide-python

Python bindings to OpenSlide

sky-xian/PathCNN

Pathology image classifier architecture

sky-xian/pcam

The PatchCamelyon (PCam) deep learning classification benchmark.

sky-xian/py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

sky-xian/scDeepCluster

scDeepCluster for Single Cell RNA-seq data

sky-xian/STAR

RNA-seq aligner

sky-xian/SufficientInputSubsets

Code for Sufficient Input Subsets Paper

sky-xian/TabInOut

Framework for information extraction from tables

sky-xian/xy_net

Large scale study about nuclei instance segmentation method on H&E histopatholgy images.