ADANET algorithm
This is an implementation of ADANET algorithm for Gene Regulatory Network inference from mRNA expression data, in form of a set of Matlab scripts and C++ workers. See: http://dl.acm.org/citation.cfm?id=2382992 for more information.
Requirements:
- Matlab environment, the script was implemented and tested using Matlab 7.10.0.499 (R2010a).
- c++ compiler and standard libraries
Installation:
- Download and unpack the source code to the download folder.
- Build the adanet mex file by invoking the appropriate command in the main adanet folder, i.e. a folder containing Makefile, from command line:
$make
Usage:
- Once the script is in working path, please refer to the example.m file.
LICENSE
Copyright (C) 2014 Janusz Slawek
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program, see LICENSE.