Pinned Repositories
clip_pipeline
CLIP pipeline
CLIP_mapping
a pipeline to map CLIP-seq data
CPEB4_public
Code to create figures for the CPEB4 manuscript (10.1186/s13059-022-02760-5).
crispr-rhapsody
A workflow to process single-cell readout of CRISPR screen performed on BD Rhapsody system
omniCLIP
omniCLIP is a CLIP-Seq peak caller
personal-genome
Scripts and notebooks to analyze my own genome sequence.
rosalind
Simple functions to solve Rosalind problems
zebrafish-tissue-expression
R shiny app to show gene expression in zebrafish tissues
slebedeva's Repositories
slebedeva/CLIP_mapping
a pipeline to map CLIP-seq data
slebedeva/omniCLIP
omniCLIP is a CLIP-Seq peak caller
slebedeva/zebrafish-tissue-expression
R shiny app to show gene expression in zebrafish tissues
slebedeva/01-household-energy
Predict electricity consumption on US households
slebedeva/advent_of_code
My solutions to some puzzles of advent of code in python (only selected puzzles)
slebedeva/basic-ci
CI/CD template repo
slebedeva/ci-cd-example
ci-cd-example
slebedeva/CPEB4_public
Code to create figures for the CPEB4 manuscript (10.1186/s13059-022-02760-5).
slebedeva/crispr-rhapsody
A workflow to process single-cell readout of CRISPR screen performed on BD Rhapsody system
slebedeva/cv
slebedeva/GuideRNA_design_scripts_Joung_Nat_prot_2017
Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
slebedeva/Infrared_PARCLIP_mapping
Pipeline to map reads from the infrared PAR-CLIP protocol
slebedeva/ORFquant
An R package for Splice-aware quantification of translation using Ribo-seq data
slebedeva/personal-genome
Scripts and notebooks to analyze my own genome sequence.
slebedeva/rosalind
Simple functions to solve Rosalind problems
slebedeva/correl-aid-r-setup
Docker set up for R environment used in CorrelAid R course
slebedeva/dotfiles
Default configuration for Le Wagon's students
slebedeva/ml-zoomcamp-2024
My notebooks for following the ML Zoomcamp at http://mlzoomcamp.com/
slebedeva/python-cheatsheet
Comprehensive Python Cheatsheet
slebedeva/PythonDaysOfCode
my solutions for Python days of code WWcode challenge
slebedeva/qpcr
R functions to process qpcr data from BioRad machine.
slebedeva/Riboseq_Pipeline
This is the Lab's standard Ribo-seq processing pipeline, a snakemake workflow and some R scripts.
slebedeva/rnaroids
slebedeva/seqtools
Utilities to deal with sequencing data
slebedeva/sheet-music
Sheet music by slebedeva
slebedeva/simplecv
A simple cv template written in LaTex
slebedeva/slebedeva
About me
slebedeva/slebedeva.github.io
My personal TILs
slebedeva/taxi-fare-interface
Le Wagon exercise for user interface
slebedeva/the_magic_eye
A simple app version of the all-seeing magic eye that foretells your future