Demultiplex fasta based on barcodes in the Casava 1.8 header. This version uses i7 index from paired barcode.
You can set edit distance between observed barcode and barcodes specified in the BARCODES file.
-h, --help show this help message and exit
-f FASTQ_FOLDER, --fastq_folder FASTQ_FOLDER
Folder containing fastq.gz files for demultiplex
-o OUTPUT, --output OUTPUT
Output folder
-b BARCODES, --barcodes BARCODES
File with barcodes that should be demultiplexed and
samle names. Other barcodes will be discarded
-d DISTANCE, --distance DISTANCE
Distance between observed and target barcode