/RELIC_Silu

initial code for RELIC

Primary LanguageJupyter Notebook

RELIC_Silu

The whole workflow is in file "compare_inferred_graph.ipynb"

  1. data generation
  2. lineage inference
    • profiling
    • pre-clustering
    • preserving-ops
      • pairwise (cell, col, relational metric)
      • intra-cluster mst + inter-cluster mst
  3. compare the inferred graph with real lineage graph
    • number of common edges
    • TODO: parital order?