slyalina

Bioinformatics PhD student at UCSF/Gladstone Institutes

San Francisco, CA

Pinned Repositories

AlleleAnalyzer
A software tool for personalized and allele-specific CRISPR editing.
Language:Jupyter Notebook16 5 185
metagenomics_pipeline_with_sciluigi
Trying out Luigi/SciLuigi to hopefully write better pipelines, replacing clunky shell scripts
Language:Python00
Mouse_IBD_2017_paper_supporting_code
Supporting code for https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585689/
Language:HTML10
optimize_over_tree
A mixed integer programming solution to the maximum phylogenetic diversity problem
Language:Python00
search_16S_py
A simple python implementation of the 16S finding procedure described in https://doi.org/10.1101/124131
Language:Python00

slyalina/Mouse_IBD_2017_paper_supporting_code
Supporting code for https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5585689/
Language:HTML10
slyalina/metagenomics_pipeline_with_sciluigi
Trying out Luigi/SciLuigi to hopefully write better pipelines, replacing clunky shell scripts
Language:Python00
slyalina/optimize_over_tree
A mixed integer programming solution to the maximum phylogenetic diversity problem
Language:Python00
slyalina/search_16S_py
A simple python implementation of the 16S finding procedure described in https://doi.org/10.1101/124131
Language:Python00