Pinned Repositories
main-pipelines
main repository for SMaHT pipelines
qc-parser
Parses outputs of different QC tools and unifies them for the SMaHT portal
rnaseq-pipelines
components for RNA-seq pipelines
shared-pipelines
shared components for analysis pipelines
smaht-dac-governance
Governance, legal and policy information related to the SMaHT DAC's various tools and applications
smaht-pipeline-utils
pipeline utilities
smaht-portal
SMaHT Data Analysis Center Web Portal
submitr
submitr-save
This repo has been superseded. Do not use it. Ask David, Kent, or Will if you have questions.
temporary-test-repo-A-forked
SMaHT Data Analysis Center's Repositories
smaht-dac/smaht-portal
SMaHT Data Analysis Center Web Portal
smaht-dac/main-pipelines
main repository for SMaHT pipelines
smaht-dac/rnaseq-pipelines
components for RNA-seq pipelines
smaht-dac/o2-processing-utils
Tool for running and logging a couple of bioinformatics tools on O2 (HMS' HPC).
smaht-dac/qc-parser
Parses outputs of different QC tools and unifies them for the SMaHT portal
smaht-dac/shared-pipelines
shared components for analysis pipelines
smaht-dac/smaht-dac-governance
Governance, legal and policy information related to the SMaHT DAC's various tools and applications
smaht-dac/smaht-pipeline-utils
pipeline utilities
smaht-dac/submitr
smaht-dac/submitr-save
This repo has been superseded. Do not use it. Ask David, Kent, or Will if you have questions.
smaht-dac/temporary-test-repo-A-forked
smaht-dac/alignment-pipelines
components for alignment pipelines
smaht-dac/dmichaels-temporary-experiment-of-import
New submitr repo which will be an import of SubmitCGAP rather than a fork (will rename later)
smaht-dac/encoded-core
Repository for data models common to Park Lab ENCODE style projects
smaht-dac/foursight-smaht
foursight for smaht-portal
smaht-dac/higlass-misc
smaht-dac/hms-utils
Miscellaneous Python utilities from David Michaels @ HMS DBMI
smaht-dac/pipelines-docs
pipelines documentation
smaht-dac/pipelines-scripts
smaht-dac/qc-pipelines
components for quality control pipelines
smaht-dac/sentieon-pipelines
sentieon components for analysis pipelines