Pinned Repositories
app-template
This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
chopper
A tool for partitioning a set of sequences into similar batches.
Chopper-old
A tool to partition a set of sequences into similar batches.
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
SViper
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
smehringer's Repositories
smehringer/SViper
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
smehringer/Chopper-old
A tool to partition a set of sequences into similar batches.
smehringer/app-template
This is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
smehringer/chopper
A tool for partitioning a set of sequences into similar batches.
smehringer/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
smehringer/awesome-modern-cpp
A collection of resources on modern C++
smehringer/b.i.o.
The Biological Input-Output library
smehringer/benchmark
smehringer/benchmark-website
smehringer/benchmark_app
SeqAn Benchmarks
smehringer/bsc
bachelor paper
smehringer/CellTracker
Hough Transform to segment and track yeast cells
smehringer/fiji
work project
smehringer/Hierarchical_Interleaved_Bloomfilter
HIBF and IBF
smehringer/HPI_Hackaton
smehringer/kmindex_benchmarks
smehringer/learning-resources
Provides online material and tutorials for modern C++, efficient data structures and algorithms.
smehringer/Mash
Fast genome and metagenome distance estimation using MinHash
smehringer/raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
smehringer/ScavengerHunt
Teaching material for a unix introduction course
smehringer/sdsl-lite
Succinct Data Structure Library 3.0 (unstable, prerelease)
smehringer/seqan
SeqAn's official repository.
smehringer/SeqAn3_read_mapper
smehringer/sharg-parser
THE argument parser for bio-c++ tools.
smehringer/smash-trial
smehringer/tool_description_lib
A library to output tool description files like CTD or CWL
smehringer/usage_plots
Scripts for generating plots about the usage of OpenMS
smehringer/www.seqan.de