smujiang

CalculateSUV

Matlab code for calculating SUV in PET images

CARN

Direct Automated Quantitative Measurement of Spine by Cascade Amplifier Regression Network with Manifold Regularization

CellularComposition

Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and high-grade serous ovarian tumors.

Cytomine_GetAnnotation

Pull annotations and the corrosponding image patches from a Cytomine server.

MxIF_DAPI_ref_QC

MxIF image quality checking

Re-stained_WSIs_Registration

Re-stained whole slide image alignment

TumorStromaReaction

Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

WSI2DICOM

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

WSIPenMarkingRemoval

Remove pen-marking annotations on whole slide images(WSIs) for data achiving.

WSITools

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

smujiang/CARN

Direct Automated Quantitative Measurement of Spine by Cascade Amplifier Regression Network with Manifold Regularization

smujiang/Cytomine_GetAnnotation

Pull annotations and the corrosponding image patches from a Cytomine server.

smujiang/Cytomine_Python_Client-0.1.4_for_python_3.6

This is a installation package of Cytomine_Python_Client-0.1.4 for python 3.6. The original one is just compatible with python 2.7, which can be cloned from https://github.com/cytomine/Cytomine-python-client

smujiang/ObjectDetectionAPIGuide

A self summarized tutorial for Object detection API. https://github.com/tensorflow/models/tree/master/research/object_detection

smujiang/quip_cnn_segmentation

CNN based segmentation codes

smujiang/ALOCC_Keras

Keras implementation of Adversarially Learned One-Class Classifier or ALOCC for short.

smujiang/ASAP

Program for the analysis and visualization of whole-slide images in digital pathology

smujiang/clinical-grade-computational-pathology-using-weakly-supervised-deep-learning-on-whole-slide-images

首个临床级别的 AI 系统可用源码

smujiang/Conv-Autoencoder

Convolutional Autoencoder

smujiang/deep-visualization-toolbox

DeepVis Toolbox

smujiang/DigiPath_MLTK

smujiang/Fast_WSI_Color_Norm

Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology

smujiang/keras-grad-cam

An implementation of Grad-CAM with keras

smujiang/keras_to_tensorflow

General code to convert a trained keras model into an inference tensorflow model

smujiang/Kernelized-Rank-Learning

Kernelized rank learning for personalized drug recommendation

smujiang/Mask_RCNN

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

smujiang/matterport-maskrcnn-with-tensorflow-serving

Custom Mask R-CNN matterport's model with tensorflow serving

smujiang/MIL-nature-medicine-2019

smujiang/models

Models and examples built with TensorFlow

smujiang/mrcnn_serving_ready

🛠 Converting Mask R-CNN Keras model to Tensorflow model and Serving model

smujiang/NCRF

Cancer metastasis detection with neural conditional random field (NCRF)

smujiang/nehe-opengl

The complete archive of all NeHe OpenGL Lessons available at http://nehe.gamedev.net.

smujiang/NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation

smujiang/openseadragon

An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.

smujiang/Pytorch-UNet

PyTorch implementation of the U-Net for image semantic segmentation with high quality images

smujiang/salad

A toolbox for domain adaptation and semi-supervised learning. Contributions welcome.

smujiang/SuperCRF

smujiang/Thread-Portrait

Here is the code I used to make my Thread Portrait.

smujiang/USCIS-Case-Tracker

Check USCIS case status

smujiang/YNet

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images