snakemake/snakemake-executor-plugin-azure-batch

Release?

johanneskoester opened this issue · 6 comments

HI @jakevc, shall we release? Does the true API workflow run for you? https://github.com/snakemake/snakemake-executor-plugin-azure-batch/actions/workflows/ci_true_api.yml (there is a "run workflow" button for manually triggering it).

@johanneskoester latest true run just failed with:

WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
WorkflowError:
The following required arguments are missing for plugin s3: --storage-s3-access-key, --storage-s3-secret-key.

Ah, this sounds like envvars are not properly passed to the batch job.

Fix pushed

🚀

It worked!!! Release time!